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spatialrefinery
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Installation
Tutorials
Downloading Xenium data
Xenium to SpatialData zarr
Converting images to OME-TIFF
Nucleus segmentation to SpatialData zarr
API reference
spatialrefinery.download_xenium_study
spatialrefinery.xenium_to_spatialdata
spatialrefinery.xenium_to_spatialdata_zip
spatialrefinery.convert_to_ometiff
spatialrefinery.segmentation.instanseg.segment_wsi
spatialrefinery.segmentation.to_spatialdata.geojson_to_spatialdata
spatialrefinery.segmentation.to_spatialdata.default_zarr_path
Citation & License
Changelog
References
System Settings
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